Index

C

cli() (in module kmerdb)

compresslevel (kmerdb.fileutil.KDBWriter attribute) correlation() (in module kmerdb.distance)

D

d2s() (in module kmerdb.distance)

distances() (in module kmerdb)

E

euclidean() (in module kmerdb.distance)

G

get_matrix() (in module kmerdb)

get_root_logger() (in module kmerdb)

H

hamming() (in module kmerdb.distance) has_index() (in module kmerdb.index) header() (in module kmerdb)

header_dict() (kmerdb.seqparser.SeqParser method) hierarchical() (in module kmerdb) histogram() (in module kmerdb.database)

I

id_to_kmer() (in module kmerdb.kmer) index_file() (in module kmerdb)

IndexBuilder (class in kmerdb.index) IndexReader (class in kmerdb.index) is_gz_file() (in module kmerdb.index)

K

KDBReader (class in kmerdb.fileutil) KDBWriter (class in kmerdb.fileutil) kmeans() (in module kmerdb) kmer_to_id() (in module kmerdb.kmer) kmerdb module kmerdb.database module kmerdb.distance module

kmerdb.fileutil module kmerdb.index module kmerdb.kmer module kmerdb.parse module kmerdb.seqparser module Kmers (class in kmerdb.kmer)

M

markov_probability() (in module kmerdb) module kmerdb kmerdb.database kmerdb.distance kmerdb.fileutil kmerdb.index kmerdb.kmer kmerdb.parse kmerdb.seqparser

N

neighbors() (in module kmerdb.kmer)

O

open() (in module kmerdb.fileutil) (in module kmerdb.index)

P

parsefile() (in module kmerdb.parse)

profile (kmerdb.fileutil.KDBReader attribute) profile() (in module kmerdb)

R

read_line() (in module kmerdb.index)

S

SeqParser (class in kmerdb.seqparser) shred() (kmerdb.kmer.Kmers method)

slurp() (kmerdb.fileutil.KDBReader method) spearman() (in module kmerdb.distance) SqliteKdb (class in kmerdb.database)

V

view() (in module kmerdb)

W

write_index() (in module kmerdb.index)